PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130554.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 111aa    MW: 11716.2 Da    PI: 9.5406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-054464121
                    EEETTTTEEESSHHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                    ++C++C+k F r  nL+ H r
  XP_009130554.1 44 FVCEICNKGFQRDQNLRLHRR 64
                    89*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-54364IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.73E-54464No hitNo description
PfamPF121715.3E-54467IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.5154464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MPPVDLDNSS GDARSVSRNL PGMPDPEAEV IALSPKTLMA KNRFVCEICN KGFQRDQNLR  60
LHRRGPKQTT LDFLGLGRAV GNGSSNPGGG LSALFGTAGE FSGKDIGRTS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892581e-146AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701973.13e-76PREDICTED: protein indeterminate-domain 1-like
RefseqXP_013701967.13e-76PREDICTED: protein indeterminate-domain 1-like
RefseqXP_009130554.13e-76PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotQ9LVQ74e-29IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM4ESP04e-76M4ESP0_BRARP; Uncharacterized protein
STRINGBra031820.1-P1e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3058722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-30C2H2-like zinc finger protein